Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
← Dataset search

PRJEB11884

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This human bulk-RNA-seq from Illumina HiSeq 2000 generated 78.7 million short reads (15.7 gigabases) with exceptional quality (99.2% Q20, 97.9% Q30) and 49.7% GC. The high quality and large scale support robust, genome-wide gene expression quantification and transcript discovery in human tissues.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
8 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 15742235200 reported
total reads 78711176 reported
n content pct 0.031 measured
pct q20 bases 99.2 measured
pct q30 bases 97.9 measured
gc content pct 49.7 measured
mean read length 100 measured
mean base quality 37.6 measured
adapter content pct 0.33 measured
duplication rate pct 16.44 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.9 measured ×1 100%
mean base quality 37.6 measured ×0.6 100%
adapter content pct 0.33 measured ×0.4 100%
duplication rate pct 16.44 measured ×0.4 100%
QC cost 7 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0