Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJEB11910

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Hypsibius dujardini (tardigrade) whole-genome short-read sequencing via Illumina HiSeq 2000 with 133 million reads and 26.9 billion bases at 91.6% Q20 and 86% Q30. The 50.4% GC content and thorough 2-file structure suggest organized sample processing. This dataset addresses the unique genomic composition and extreme stress responses of tardigrades, though users should verify whether the sequence quality supports the demanding assembly requirements of eukaryotic genomes.

Data type / assay
WGS
Organism
Hypsibius dujardini
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
2 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 26906398384 reported
total reads 133199992 reported
n content pct 0.017 measured
pct q20 bases 91.6 measured
pct q30 bases 86 measured
gc content pct 50.4 measured
mean read length 101 measured
mean base quality 33.9 measured
adapter content pct 1.73 measured
duplication rate pct 2.41 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 86 measured ×1 80%
duplication rate pct 2.41 measured ×0.5 100%
adapter content pct 1.73 measured ×0.4 95%
QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0