Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJEB12503

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This metagenome amplicon from Illumina MiSeq provides targeted microbial-community profiling (890K reads, Q30=95%) with high per-base accuracy—balanced GC content (52.2%) and excellent quality metrics support precise taxonomic assignment and abundance quantification across environmental or clinical samples despite moderate sequencing depth.

Data type / assay
amplicon
Organism
metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
90 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 445394000 reported
total reads 890788 reported
n content pct 0 measured
pct q20 bases 98.6 measured
pct q30 bases 95 measured
gc content pct 52.2 measured
mean read length 250 measured
mean base quality 36.6 measured
adapter content pct 0 measured
duplication rate pct 97.85 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0