Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJEB12872

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Homo sapiens whole-exome sequencing (WES/targeted-capture) via Illumina HiSeq 2500 with 80.2 million reads and 16.2 billion bases at good quality (97.7% Q20, 94.9% Q30). The 48.5% GC reflects genomic average in captured exonic regions. This dataset enables variant discovery in protein-coding regions for Mendelian disease studies or population-level association analyses.

Data type / assay
WES
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
7 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 16200888436 reported
total reads 80202418 reported
n content pct 0.007 measured
pct q20 bases 97.7 measured
pct q30 bases 94.9 measured
gc content pct 48.5 measured
mean read length 101 measured
mean base quality 36.8 measured
adapter content pct 23.88 measured
duplication rate pct 4.47 measured
mean target coverage 261.3 extrapolated
How this grade was computed
Weighted mean of 4 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.

mean target coverage 261.3 extrapolated ×1.2 100%
pct q30 bases 94.9 measured ×1 100%
duplication rate pct 4.47 measured ×0.5 100%
adapter content pct 23.88 measured ×0.4 0%
QC cost 16 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0