PRJEB12910

BioProject first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Lachancea cidri WGS with balanced excellence across all dimensions (Q30 93.4%, zero adapter, duplication 6.38%) showing no single metric constraint; highly reusable for genome assembly, variant calling, and comparative genomics.

Data type / assay

WGS

Organism

Lachancea cidri

Instrument

454 GS

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), submitted files

N numbers (samples, groups)

3 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 960158589 reported

total reads 11824373 reported

n content pct 0.005 measured

pct q20 bases 96.7 measured

pct q30 bases 93.4 measured

gc content pct 40.5 measured

mean read length 50 measured

mean base quality 36.7 measured

adapter content pct 0 measured

duplication rate pct 6.38 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.4 measured ×1 100%

duplication rate pct 6.38 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0