PRJEB12930

BioProject first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

62/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Lachancea fermentati (budding yeast) whole-genome sequencing via 454 GS (listed as ILLUMINA, likely error) with 12.4 million reads and 931.4 million bases at moderate quality (90.8% Q20, 76.4% Q30). The elevated N-content (0.842%) and 42.6% GC are concerning. Users should verify platform and treat as draft-quality for preliminary fungal comparative genomics and phylogenetics, not reference-standard assembly.

Data type / assay

WGS

Organism

Lachancea fermentati

Instrument

454 GS

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), submitted files

N numbers (samples, groups)

3 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 931415336 reported

total reads 12490857 reported

n content pct 0.842 measured

pct q20 bases 90.8 measured

pct q30 bases 76.4 measured

gc content pct 42.6 measured

mean read length 403.5 measured

mean base quality 34 measured

adapter content pct 0 measured

duplication rate pct 11.24 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 62/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 76.4 measured ×1 32%

duplication rate pct 11.24 measured ×0.5 90%

adapter content pct 0 measured ×0.4 100%

QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0