Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJEB12932

BioProject first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

63/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Lachancea mirantina (budding yeast) whole-genome sequencing via 454 GS (platform listed as ILLUMINA, likely an error) with 7.4 million reads and 755.7 million bases at moderate quality (91% Q20, 76.7% Q30). The elevated N-content (0.867%) and 44.5% GC suggest some assembly challenges. Users should verify the actual sequencing platform and consider this as a draft-quality genome suitable for comparative fungal genomics, not as a reference assembly.

Data type / assay
WGS
Organism
Lachancea mirantina
Instrument
454 GS
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
3 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 755777992 reported
total reads 7412955 reported
n content pct 0.867 measured
pct q20 bases 91 measured
pct q30 bases 76.7 measured
gc content pct 44.5 measured
mean read length 405.4 measured
mean base quality 34.1 measured
adapter content pct 0 measured
duplication rate pct 10.21 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 63/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 76.7 measured ×1 34%
duplication rate pct 10.21 measured ×0.5 93%
adapter content pct 0 measured ×0.4 100%
QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0