Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJEB13008

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Gut metagenome amplicon sequencing via Illumina MiSeq with 587,106 reads across 24 files at 97.2% Q20 and 89.9% Q30. The 55.9% GC and small total read count suggest modest sampling effort per sample. Users should assess whether the sequencing depth is sufficient for detecting rare operational taxonomic units (OTUs) and whether rarefaction normalization is appropriate given the uneven distribution across samples.

Data type / assay
amplicon
Organism
gut metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
24 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 248434307 reported
total reads 587106 reported
n content pct 0.004 measured
pct q20 bases 97.2 measured
pct q30 bases 89.9 measured
gc content pct 55.9 measured
mean read length 422.8 measured
mean base quality 35.5 measured
adapter content pct 0 measured
duplication rate pct 92.56 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.9 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0