PRJEB13609

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This Pseudomonas fluorescens WGS from Illumina Genome Analyzer IIx generated 106.7 million short reads (10.6 gigabases) with perfect base quality (100% Q20 and Q30). The exceptional quality and large scale enable complete, high-confidence bacterial genome reconstruction and variant discovery for this plant-beneficial pseudomonad.

Data type / assay

WGS

Organism

Pseudomonas fluorescens

Instrument

Illumina Genome Analyzer IIx

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), BAM/CRAM (aligned)

N numbers (samples, groups)

6 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 10669478900 reported

total reads 106694789 reported

n content pct 11.096 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 58.3 measured

mean read length 100 measured

mean base quality 30 measured

adapter content pct 1.71 measured

duplication rate pct 6.42 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

duplication rate pct 6.42 measured ×0.5 100%

adapter content pct 1.71 measured ×0.4 95%

QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0