Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJEB13646

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

56/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This mouse metagenome amplicon dataset from Illumina MiSeq generated 8.7 million short reads (3.6 gigabases) with moderate quality (89.7% Q20, 76.9% Q30) and 52.2% GC. The data supports profiling of mouse microbiota, though the moderate Q30 rate requires consideration during downstream taxonomic assignment.

Data type / assay
amplicon
Organism
mouse metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
47 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 3598458274 reported
total reads 8691170 reported
n content pct 0.003 measured
pct q20 bases 89.7 measured
pct q30 bases 76.9 measured
gc content pct 52.2 measured
mean read length 239.8 measured
mean base quality 32.7 measured
adapter content pct 0.01 measured
duplication rate pct 88.84 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 56/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 76.9 measured ×1 35%
adapter content pct 0.01 measured ×0.5 100%
QC cost 7 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0