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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
81/100 · BStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Oryza sativa
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
10,074 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
943657148870
reported
total reads
4742637712
reported
mean coverage
2194.6
extrapolated
n content pct
0.013
measured
pct q20 bases
92.9
measured
pct q30 bases
88.2
measured
gc content pct
45.2
measured
mean read length
95
measured
mean base quality
34.8
measured
adapter content pct
14.16
measured
duplication rate pct
16.48
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 81/100
The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
mean coverage
2194.6
extrapolated
×1.2
100%
pct q30 bases
88.2
measured
×1
91%
duplication rate pct
16.48
measured
×0.5
74%
adapter content pct
14.16
measured
×0.4
6%
QC cost
17 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0