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Provenance — who produced it, who reused it
Linked to 3 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
3 further papers cite this accession but reuse could not be confirmed.
Deep data QC
74/100 · CStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
683 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
137131394238
reported
total reads
872728825
reported
mean coverage
44.2
extrapolated
n content pct
0.013
measured
pct q20 bases
98.9
measured
pct q30 bases
96.6
measured
gc content pct
50.1
measured
mean read length
51
measured
mean base quality
37.5
measured
adapter content pct
11.52
measured
duplication rate pct
44.69
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 74/100
The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
mean coverage
44.2
extrapolated
×1.2
100%
pct q30 bases
96.6
measured
×1
100%
duplication rate pct
44.69
measured
×0.5
0%
adapter content pct
11.52
measured
×0.4
25%
QC cost
4 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0