Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
← Dataset search

PRJEB15296

BioProject first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Metagenome whole-genome short-read sequencing via Illumina HiSeq 2500 with 62.8 million reads and 18.8 billion bases at high quality (97.4% Q20, 93.8% Q30). The 47.8% GC and minimal N-content indicate good sequencing execution, though unspecified sample source limits interpretation. Users should verify whether this environmental or engineered-system metagenome matches their research context before assembly or binning.

Data type / assay
WGS
Organism
metagenome
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
3 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 18844335900 reported
total reads 62814453 reported
n content pct 0.001 measured
pct q20 bases 97.4 measured
pct q30 bases 93.8 measured
gc content pct 47.8 measured
mean read length 150 measured
mean base quality 39.4 measured
adapter content pct 0.01 measured
duplication rate pct 5.58 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.8 measured ×1 100%
duplication rate pct 5.58 measured ×0.5 100%
adapter content pct 0.01 measured ×0.4 100%
QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0