Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJEB15420

BioProject first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This metagenome amplicon dataset from 454 GS FLX Titanium generated 174 thousand reads (71.9 megabases) with notably lower quality (69.9% Q20, 53.1% Q30) and elevated N-content (1.77%). The small scale and reduced quality are characteristic of 454 sequencing limitations; useful only for preliminary community surveys or when long reads are essential for phylogenetic resolution.

Data type / assay
amplicon
Organism
metagenome
Instrument
454 GS FLX Titanium
Platform
LS454
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
9 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 71981230 reported
total reads 174201 reported
n content pct 1.771 measured
pct q20 bases 69.9 measured
pct q30 bases 53.1 measured
gc content pct 47.6 measured
mean read length 441.9 measured
mean base quality 28.2 measured
adapter content pct 0 measured
duplication rate pct 98.56 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 53.1 measured ×1 0%
adapter content pct 0 measured ×0.5 100%
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0