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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
77/100 · CStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
amplicon
Organism
pig gut metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
207 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
6788172560
reported
total reads
13741240
reported
n content pct
0
measured
pct q20 bases
89.1
measured
pct q30 bases
83.1
measured
gc content pct
53.5
measured
mean read length
243
measured
mean base quality
33.7
measured
adapter content pct
0.33
measured
duplication rate pct
97.01
measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 77/100
The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
83.1
measured
×1
66%
adapter content pct
0.33
measured
×0.5
100%
QC cost
4 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0