Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJEB18620

BioProject first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mixed-sample amplicon sequencing via Illumina MiSeq spanning 160 files with 18.2 million reads and 10.95 billion bases at 85.9% Q20 and 79.8% Q30. The moderate quality and 44.6% GC suggest marker-gene or functional amplicon profiling (16S, ITS, or equivalent). Users should verify the amplicon target, primer design, and whether this multi-sample dataset is adequately normalized for community composition analysis.

Data type / assay
amplicon
Organism
mixed sample
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
177 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 10953028800 reported
total reads 18194400 reported
n content pct 0.009 measured
pct q20 bases 85.9 measured
pct q30 bases 79.8 measured
gc content pct 44.6 measured
mean read length 301 measured
mean base quality 32.9 measured
adapter content pct 43.07 measured
duplication rate pct 93.74 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 79.8 measured ×1 49%
adapter content pct 43.07 measured ×0.5 0%
QC cost 3 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0