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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
69/100 · DStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Escherichia coli
Instrument
Illumina Genome Analyzer II
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
27 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
7428230489
reported
total reads
20412847
reported
mean coverage
1614.8
extrapolated
n content pct
0.042
measured
pct q20 bases
84.5
measured
pct q30 bases
70.5
measured
gc content pct
50.7
measured
mean read length
186.5
measured
mean base quality
30.9
measured
adapter content pct
0
measured
duplication rate pct
6.89
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 69/100
The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
mean coverage
1614.8
extrapolated
×1.2
100%
pct q30 bases
70.5
measured
×1
3%
duplication rate pct
6.89
measured
×0.5
100%
adapter content pct
0
measured
×0.4
100%
QC cost
16 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0