Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJEB19529

BioProject first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This human metagenome amplicon-seq from Illumina MiSeq generated 14.6 million short reads (5.39 gigabases) with good quality (93.6% Q20, 92.2% Q30) and 51.1% GC. The dataset supports microbiome profiling with sufficient depth for species-level community resolution in human-associated microbial habitats.

Data type / assay
amplicon
Organism
human metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
158 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 5388833685 reported
total reads 14641534 reported
n content pct 2.717 measured
pct q20 bases 93.6 measured
pct q30 bases 92.2 measured
gc content pct 51.1 measured
mean read length 146.1 measured
mean base quality 35.7 measured
adapter content pct 0 measured
duplication rate pct 85.9 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.2 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0