Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJEB19875

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bacteroides fragilis (gut anaerobe) whole-genome short-read sequencing via Illumina HiSeq 2500 with 12.3 million reads, 3.5 billion bases, and excellent quality (99.1% Q20, 96.9% Q30). The 44.4% GC reflects this gram-negative bacterium's genomic bias. This high-quality dataset is suitable for reference genome assembly, pangenome analysis, and studying virulence factor variability in this common pathobiont.

Data type / assay
WGS
Organism
Bacteroides fragilis
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
7 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 3536655840 reported
total reads 12280055 reported
n content pct 0.008 measured
pct q20 bases 99.1 measured
pct q30 bases 96.9 measured
gc content pct 44.4 measured
mean read length 144 measured
mean base quality 39.9 measured
adapter content pct 0.04 measured
duplication rate pct 8.22 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.9 measured ×1 100%
duplication rate pct 8.22 measured ×0.5 99%
adapter content pct 0.04 measured ×0.4 100%
QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0