← Dataset search
Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
81/100 · BStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
amplicon
Organism
Klebsiella pneumoniae
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), BAM/CRAM (aligned)
N numbers (samples, groups)
238 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
46522961184
reported
total reads
1107689552
reported
n content pct
0.003
measured
pct q20 bases
99.5
measured
pct q30 bases
98.9
measured
gc content pct
54.1
measured
mean read length
42
measured
mean base quality
38.7
measured
adapter content pct
8.84
measured
duplication rate pct
97.07
measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 81/100
The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
98.9
measured
×1
100%
adapter content pct
8.84
measured
×0.5
44%
QC cost
16 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0