PRJEB20735

BioProject first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Escherichia coli

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), submitted files

N numbers (samples, groups)

38 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 18482621958 reported

total reads 40922502 reported

mean coverage 4018 extrapolated

n content pct 0 measured

pct q20 bases 97.6 measured

pct q30 bases 95.2 measured

gc content pct 50.5 measured

mean read length 237.4 measured

mean base quality 37.9 measured

adapter content pct 0 measured

duplication rate pct 11.83 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 4018 extrapolated ×1.2 100%

pct q30 bases 95.2 measured ×1 100%

duplication rate pct 11.83 measured ×0.5 88%

adapter content pct 0 measured ×0.4 100%

QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0