PRJEB2111

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

2 further papers cite this accession but reuse could not be confirmed.

Deep data QC

72/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Klebsiella pneumoniae

Instrument

Illumina Genome Analyzer II

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), submitted files

N numbers (samples, groups)

348 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 133559898208 reported

total reads 803156019 reported

n content pct 0.04 measured

pct q20 bases 90.7 measured

pct q30 bases 83.3 measured

gc content pct 53.3 measured

mean read length 108 measured

mean base quality 29.9 measured

adapter content pct 0.25 measured

duplication rate pct 20.51 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 72/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 83.3 measured ×1 67%

duplication rate pct 20.51 measured ×0.5 61%

adapter content pct 0.25 measured ×0.4 100%

QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0