Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJEB2117

BioProject first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Yersinia aleksiciae whole-genome short-read sequencing via Illumina Genome Analyzer II with 299.9 million reads and 47.9 billion bases at solid quality (98.7% Q20, 94.2% Q30). The 47.8% GC reflects a gram-negative bacterium's typical composition. Despite the older sequencing platform, this dataset's good base quality supports reference genome assembly and comparative genomics within the Yersinia genus.

Data type / assay
WGS
Organism
Yersinia aleksiciae
Instrument
Illumina Genome Analyzer II
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
133 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 47995304737 reported
total reads 299990638 reported
n content pct 0.008 measured
pct q20 bases 98.7 measured
pct q30 bases 94.2 measured
gc content pct 47.8 measured
mean read length 76 measured
mean base quality 32.6 measured
adapter content pct 0 measured
duplication rate pct 6.15 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.2 measured ×1 100%
duplication rate pct 6.15 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0