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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
73/100 · CStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Instrument
Illumina HiSeq 1000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
15 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
29442194880
reported
total reads
145753440
reported
n content pct
0.009
measured
pct q20 bases
96.6
measured
pct q30 bases
90.1
measured
gc content pct
50.1
measured
mean read length
101
measured
mean base quality
35
measured
adapter content pct
31.65
measured
duplication rate pct
58.59
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 73/100
The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
90.1
measured
×1
100%
mean base quality
35
measured
×0.6
100%
adapter content pct
31.65
measured
×0.4
0%
duplication rate pct
58.59
measured
×0.4
37%
QC cost
15 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0