Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJEB23029

BioProject first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

85/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Mus musculus amplicon-seq from Illumina MiSeq generated 4.1 million short reads (1.01 gigabases) with good quality (91.4% Q20, 85.4% Q30) and 52.5% GC. The amplicon-targeted approach enables targeted profiling of specific genomic regions or microbial marker genes in mouse samples.

Data type / assay
amplicon
Organism
Mus musculus
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
38 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1011385790 reported
total reads 4092581 reported
n content pct 0 measured
pct q20 bases 91.4 measured
pct q30 bases 85.4 measured
gc content pct 52.5 measured
mean read length 246.6 measured
mean base quality 33.9 measured
adapter content pct 0.13 measured
duplication rate pct 92.21 measured
mean target coverage 18.7 extrapolated
How this grade was computed
Weighted mean of 2 scored metric(s) → 85/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85.4 measured ×1 77%
adapter content pct 0.13 measured ×0.5 100%
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0