Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
← Dataset search

PRJEB23315

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Klebsiella pneumoniae (nosocomial pathogen) whole-genome sequencing via Illumina HiSeq 2500 with 11.6 million reads and 3.49 billion bases at high quality (98.2% Q20, 94.5% Q30). The elevated GC at 57.4% reflects K. pneumoniae's genomic bias. This dataset supports clinical strain typing, antibiotic resistance profiling, and comparative analysis of virulence determinants in this opportunistic bacterium.

Data type / assay
WGS
Organism
Klebsiella pneumoniae
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
6 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 3497923800 reported
total reads 11659746 reported
n content pct 0.011 measured
pct q20 bases 98.2 measured
pct q30 bases 94.5 measured
gc content pct 57.4 measured
mean read length 150 measured
mean base quality 39 measured
adapter content pct 0.06 measured
duplication rate pct 11.02 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.5 measured ×1 100%
duplication rate pct 11.02 measured ×0.5 91%
adapter content pct 0.06 measured ×0.4 100%
QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0