Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJEB23542

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Saccharomyces cerevisiae whole-genome sequencing via BGISEQ-500 with 102.1 million reads and 20.2 billion bases at ultra-high coverage (1,690.3x, extrapolated) with measured quality 92.8% Q20 and 81.5% Q30. The 1.328% N-content and platform-specific read characteristics are minor; this yeast dataset excels for detecting low-frequency variants and structural variation. Verify whether extreme coverage suits your research question or represents method-validation sequencing.

Data type / assay
WGS
Organism
Saccharomyces cerevisiae
Instrument
BGISEQ-500
Platform
BGISEQ
Read type
short-read
Files available
FASTQ (raw reads), BAM/CRAM (aligned)
N numbers (samples, groups)
9 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 20283238188 reported
total reads 102175414 reported
mean coverage 1690.3 extrapolated
n content pct 1.328 measured
pct q20 bases 92.8 measured
pct q30 bases 81.5 measured
gc content pct 35.1 measured
mean read length 100 measured
mean base quality 32.9 measured
adapter content pct 0 measured
duplication rate pct 2.02 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 1690.3 extrapolated ×1.2 100%
pct q30 bases 81.5 measured ×1 57%
duplication rate pct 2.02 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0