PRJEB23702

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WES

Organism

Mus musculus

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), BAM/CRAM (aligned)

N numbers (samples, groups)

8 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 17490876150 reported

total reads 116605841 reported

n content pct 0 measured

pct q20 bases 98.8 measured

pct q30 bases 95.9 measured

gc content pct 48.3 measured

mean read length 75 measured

mean base quality 37.7 measured

adapter content pct 0 measured

duplication rate pct 37.76 measured

mean target coverage 323.9 extrapolated

How this grade was computed

Weighted mean of 4 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.

mean target coverage 323.9 extrapolated ×1.2 100%

pct q30 bases 95.9 measured ×1 100%

duplication rate pct 37.76 measured ×0.5 22%

adapter content pct 0 measured ×0.4 100%

QC cost 18 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0