Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJEB23709

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 18 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

18 further papers cite this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk RNA-seq (human). Grade A quality (100/100) with reference-grade characteristics across all measured metrics. Q30 of 96.9% and zero adapter content are hallmark indicators of pristine sequencing; duplication at 24.79% is nominal. This is high-confidence reusable data.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
N numbers (samples, groups)
91 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1271569537775 reported
total reads 6339376591 reported
n content pct 0.006 measured
pct q20 bases 99.1 measured
pct q30 bases 96.9 measured
gc content pct 50.2 measured
mean read length 98.7 measured
mean base quality 37.3 measured
adapter content pct 0 measured
duplication rate pct 24.79 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.9 measured ×1 100%
mean base quality 37.3 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 24.79 measured ×0.4 100%

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

2 studies use it 1 reproduced 1 flagged mean score 69