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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
84/100 · BStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Escherichia coli
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
6 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
5648027050
reported
total reads
30298981
reported
mean coverage
1227.8
extrapolated
n content pct
0.001
measured
pct q20 bases
92.4
measured
pct q30 bases
84.6
measured
gc content pct
50.4
measured
mean read length
101
measured
mean base quality
34.3
measured
adapter content pct
1.72
measured
duplication rate pct
20.35
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 84/100
The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
mean coverage
1227.8
extrapolated
×1.2
100%
pct q30 bases
84.6
measured
×1
73%
duplication rate pct
20.35
measured
×0.5
61%
adapter content pct
1.72
measured
×0.4
95%
QC cost
26 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0