Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

PRJEB23788

BioProject first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Uncultured eukaryote amplicon sequencing via Illumina MiSeq with 28.7 million reads and 14 billion bases at high quality (97.7% Q20, 93.8% Q30). The 44.5% GC reflects protistan or fungal marker sequences. The large read volume and sample count (289 files) enable sensitive detection of rare eukaryotic taxa in environmental samples. Consider phylogenetic placement and potential host-specificity when interpreting community patterns.

Data type / assay
amplicon
Organism
uncultured eukaryote
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
289 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 14079142321 reported
total reads 28730409 reported
n content pct 0.008 measured
pct q20 bases 97.7 measured
pct q30 bases 93.8 measured
gc content pct 44.5 measured
mean read length 230.5 measured
mean base quality 36.4 measured
adapter content pct 0 measured
duplication rate pct 96.2 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.8 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0