Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
← Dataset search

PRJEB25016

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

74/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Pseudomonas aeruginosa (opportunistic pathogen) whole-genome pooled-clone sequencing via Illumina MiSeq with 12.4 million reads and 5.96 billion bases at excellent quality (98.3% Q20, 96.9% Q30). The elevated GC (64.3%) is characteristic of this gram-negative bacterium. The pooled approach may complicate variant phasing; users should verify whether individual clones can be resolved for clinical surveillance or antimicrobial resistance tracking.

Data type / assay
WGS
Organism
Pseudomonas aeruginosa
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
10 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 5961302294 reported
total reads 12394578 reported
n content pct 0 measured
pct q20 bases 98.3 measured
pct q30 bases 96.9 measured
gc content pct 64.3 measured
mean read length 244 measured
mean base quality 36.7 measured
adapter content pct 0 measured
duplication rate pct 72.29 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 74/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.9 measured ×1 100%
duplication rate pct 72.29 measured ×0.5 0%
adapter content pct 0 measured ×0.4 100%
QC cost 7 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0