PRJEB2631

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

50/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Agathobacter rectalis (butyrate-producing bacterium) whole-genome sequencing via Illumina HiSeq 2000 with 436.6 million reads and 87.3 billion bases at decent quality (93.5% Q20, 81.1% Q30). The 39.5% GC reflects gram-positive firmicute composition. This dataset supports genome assembly, metabolic pathway mapping, and comparative analysis of human microbiota-associated Faecalibacterium relatives.

Data type / assay

WGS

Organism

Agathobacter rectalis

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), BAM/CRAM (aligned)

N numbers (samples, groups)

48 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 87322125000 reported

total reads 436610625 reported

n content pct 0.015 measured

pct q20 bases 93.5 measured

pct q30 bases 81.1 measured

gc content pct 39.5 measured

mean read length 100 measured

mean base quality 33.6 measured

adapter content pct 0.02 measured

duplication rate pct 42.01 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 50/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 81.1 measured ×1 56%

duplication rate pct 42.01 measured ×0.5 0%

adapter content pct 0.02 measured ×0.4 100%

QC cost 20 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0