PRJEB2733

BioProject first seen 2017

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

2 further papers cite this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Schizosaccharomyces pombe

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), BAM/CRAM (aligned)

N numbers (samples, groups)

339 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 132475688000 reported

total reads 662378440 reported

n content pct 0.005 measured

pct q20 bases 97 measured

pct q30 bases 92.5 measured

gc content pct 37.2 measured

mean read length 100 measured

mean base quality 38.6 measured

adapter content pct 0.01 measured

duplication rate pct 6.18 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.5 measured ×1 100%

duplication rate pct 6.18 measured ×0.5 100%

adapter content pct 0.01 measured ×0.4 100%

QC cost 12 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0