← Dataset search
Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
100/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Staphylococcus aureus
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), BAM/CRAM (aligned)
N numbers (samples, groups)
393 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
186811688200
reported
total reads
1198190520
reported
n content pct
0.007
measured
pct q20 bases
99
measured
pct q30 bases
95.2
measured
gc content pct
33.1
measured
mean read length
75
measured
mean base quality
39.4
measured
adapter content pct
0.01
measured
duplication rate pct
6.46
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 100/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
95.2
measured
×1
100%
duplication rate pct
6.46
measured
×0.5
100%
adapter content pct
0.01
measured
×0.4
100%
QC cost
17 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0