Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

PRJEB27646

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Homo sapiens whole-exome sequencing via Illumina HiSeq 4000 with 425.8 million reads, 128.5 billion bases, and exceptional quality (97.4% Q20, 93% Q30, zero N-content). The high coverage depth and consistency suit both rare-variant discovery and robust genotyping in disease cohorts. This dataset is well-powered for detecting heterozygous variants and can support copy-number variation calling if properly processed.

Data type / assay
WES
Organism
Homo sapiens
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
9 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 128592923062 reported
total reads 425804381 reported
n content pct 0 measured
pct q20 bases 97.4 measured
pct q30 bases 93 measured
gc content pct 49 measured
mean read length 151 measured
mean base quality 38.5 measured
adapter content pct 1.32 measured
duplication rate pct 8.38 measured
mean target coverage 2074.1 extrapolated
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.

mean target coverage 2074.1 extrapolated ×1.2 100%
pct q30 bases 93 measured ×1 100%
duplication rate pct 8.38 measured ×0.5 100%
adapter content pct 1.32 measured ×0.4 98%
QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0