Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJEB28191

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 4 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

4 further papers cite this accession but reuse could not be confirmed.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

WGS from Bos indicus; B-grade (87/100). Moderate duplication at 23.96% is the primary limiter but acceptable for standard variant pipelines; solid base quality (93.8% Q30, Q36 mean) and large read depth (118.8B reads) enable compensatory coverage for SNV discovery and reference-based assembly.

Data type / assay
WGS
Organism
Bos indicus
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
N numbers (samples, groups)
474 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 20312596558513 reported
total reads 118766832062 reported
n content pct 0.005 measured
pct q20 bases 97.8 measured
pct q30 bases 93.8 measured
gc content pct 43.8 measured
mean read length 150 measured
mean base quality 36 measured
adapter content pct 0.11 measured
duplication rate pct 23.96 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.8 measured ×1 100%
duplication rate pct 23.96 measured ×0.5 50%
adapter content pct 0.11 measured ×0.4 100%
QC cost 16 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 flagged mean score 45