Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJEB28447

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Amplicon sequencing from unspecified organism via Illumina MiSeq with 2.7 million reads (920 million bases) spanning 74 files at high quality (97.5% Q20, 96.6% Q30). The 55% GC and high per-sample read depth suggest well-executed targeted profiling. Without knowing the amplicon target and biological source, assess whether this dataset matches your organism and marker-gene of interest before reuse.

Data type / assay
amplicon
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
74 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 920199196 reported
total reads 2715829 reported
n content pct 0 measured
pct q20 bases 97.5 measured
pct q30 bases 96.6 measured
gc content pct 55 measured
mean read length 251.4 measured
mean base quality 36.8 measured
adapter content pct 0 measured
duplication rate pct 95.42 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.6 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0