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Provenance — who produced it, who reused it
Linked to 4 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
4 further papers cite this accession but reuse could not be confirmed.
Deep data QC
68/100 · DStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Gallus gallus
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), BAM/CRAM (aligned)
N numbers (samples, groups)
127 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
1480734981865
reported
total reads
6483260929
reported
mean coverage
1346.1
extrapolated
n content pct
0.065
measured
pct q20 bases
49.9
measured
pct q30 bases
0.7
measured
gc content pct
64
measured
mean read length
126
measured
mean base quality
15.1
measured
adapter content pct
0.13
measured
duplication rate pct
7.15
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 68/100
The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
mean coverage
1346.1
extrapolated
×1.2
100%
pct q30 bases
0.7
measured
×1
0%
duplication rate pct
7.15
measured
×0.5
100%
adapter content pct
0.13
measured
×0.4
100%
QC cost
1 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0