PRJEB31736

BioProject first seen 2023

Provenance — who produced it, who reused it

Linked to 13 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

13 further papers cite this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Homo sapiens

Instrument

Illumina NovaSeq 6000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), BAM/CRAM (aligned)

N numbers (samples, groups)

37,090 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 615629100525900 reported

total reads 3229721553690 reported

mean coverage 198590 extrapolated

n content pct 0.001 measured

pct q20 bases 97.2 measured

pct q30 bases 96.1 measured

gc content pct 51.1 measured

mean read length 150 measured

mean base quality 29.3 measured

adapter content pct 0.3 measured

duplication rate pct 12.54 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 198590 extrapolated ×1.2 100%

pct q30 bases 96.1 measured ×1 100%

duplication rate pct 12.54 measured ×0.5 86%

adapter content pct 0.3 measured ×0.4 100%

QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0