Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJEB33193

BioProject first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

40/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina HiSeq 2500 whole-genome sequencing dataset from Pseudomonas aeruginosa PAO1 provides 33.3 million reads and 16.7 billion bases with good quality (82.7% Q20, 75.3% Q30), enabling virulence and antibiotic-resistance characterization in this model nosocomial pathogen. The 58.2% GC is typical; the moderate depth supports detecting insertion sequences, phage elements, and resistance-associated mutations. This dataset is valuable for understanding clinical-isolate divergence from reference genomes and studying quorum-sensing and biofilm regulation.

Data type / assay
WGS
Organism
Pseudomonas aeruginosa PAO1
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
31 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 16758028554 reported
total reads 33382527 reported
n content pct 0.001 measured
pct q20 bases 82.7 measured
pct q30 bases 75.3 measured
gc content pct 58.2 measured
mean read length 251 measured
mean base quality 33 measured
adapter content pct 63.21 measured
duplication rate pct 6.68 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 40/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 75.3 measured ×1 27%
duplication rate pct 6.68 measured ×0.5 100%
adapter content pct 63.21 measured ×0.4 0%
QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0