Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
← Dataset search

PRJEB34109

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mouse gut metagenome amplicon sequencing via Illumina MiSeq with 14.7 million reads and 7.38 billion bases at good quality (95% Q20, 92% Q30). The 55% GC and substantial depth suit microbial community profiling of laboratory-mouse models. Users should verify whether samples are from specific strains or genetic backgrounds to assess comparability with their own mouse microbiota studies.

Data type / assay
amplicon
Organism
mouse gut metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
61 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 7382406759 reported
total reads 14716354 reported
n content pct 0 measured
pct q20 bases 95 measured
pct q30 bases 92 measured
gc content pct 55 measured
mean read length 251 measured
mean base quality 35.5 measured
adapter content pct 0 measured
duplication rate pct 97.24 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 6 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0