Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJEB34245

BioProject

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

2 further papers cite this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Assembly-scale WGS of Gallus gallus. Nominal grade A, 100/100, but evidence_strength=0.61 with extrapolated coverage (1621x) requires critical evaluation. Perfect measured metrics (Q30 93%, duplication 7.7%) and extraordinary extrapolated depth suggest exceptional datasets, yet low evidence strength means this assessment is provisional and should be independently verified before de novo assembly commitment.

Data type / assay
WGS
Organism
Gallus gallus
Instrument
Illumina HiSeq 3000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
875 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1783065465732 reported
total reads 6731324491 reported
mean coverage 1621 extrapolated
n content pct 0.001 measured
pct q20 bases 97.1 measured
pct q30 bases 93 measured
gc content pct 42.3 measured
mean read length 150 measured
mean base quality 38.5 measured
adapter content pct 0.16 measured
duplication rate pct 7.69 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 1621 extrapolated ×1.2 100%
pct q30 bases 93 measured ×1 100%
duplication rate pct 7.69 measured ×0.5 100%
adapter content pct 0.16 measured ×0.4 100%
QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0