Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

PRJEB34417

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

91/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Metagenome amplicon sequencing via Illumina MiSeq with 2 million reads and 1.18 billion bases at good quality (95.2% Q20, 87.4% Q30). The 56.2% GC and 24 files suggest directed amplicon profiling, though source is unspecified. Users should clarify the amplicon target and environmental source; modest read depth may limit rare-OTU detection depending on sample complexity.

Data type / assay
amplicon
Organism
metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
24 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1181441608 reported
total reads 2000100 reported
n content pct 0 measured
pct q20 bases 95.2 measured
pct q30 bases 87.4 measured
gc content pct 56.2 measured
mean read length 287.2 measured
mean base quality 35.1 measured
adapter content pct 0 measured
duplication rate pct 96.09 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 91/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.4 measured ×1 87%
adapter content pct 0 measured ×0.5 100%
QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0