PRJEB34503

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Illumina HiSeq 1000 short-read WGS of Pseudomonas aeruginosa PA14 yields 6.4 billion bases at outstanding quality (97.1% Q20, 94% Q30). Clean genomic reads suit complete genome assembly and precise SNP/indel calling for this clinically important multidrug-resistant pathogen.

Data type / assay

WGS

Organism

Pseudomonas aeruginosa PA14

Instrument

Illumina HiSeq 1000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), submitted files

N numbers (samples, groups)

20 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 6423645607 reported

total reads 14823237 reported

n content pct 0 measured

pct q20 bases 97.1 measured

pct q30 bases 94 measured

gc content pct 66 measured

mean read length 225 measured

mean base quality 37.2 measured

adapter content pct 0 measured

duplication rate pct 7.9 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94 measured ×1 100%

duplication rate pct 7.9 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0