Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJEB35012

BioProject first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mus musculus amplicon sequencing via Illumina MiSeq with 1.3 million reads and 327.2 million bases at exceptional quality (98.9% Q20, 98% Q30). The 54.2% GC and 56 files indicate modest multi-sample design. Users should verify the amplicon target; if targeted genetic loci, this dataset suits genotyping studies; if marker-gene, depth per sample may be limiting for rare-OTU detection.

Data type / assay
amplicon
Organism
Mus musculus
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
56 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 327295953 reported
total reads 1296322 reported
n content pct 0 measured
pct q20 bases 98.9 measured
pct q30 bases 98 measured
gc content pct 54.2 measured
mean read length 252.4 measured
mean base quality 37.3 measured
adapter content pct 0 measured
duplication rate pct 96.88 measured
mean target coverage 6.1 extrapolated
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0