PRJEB35511

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Illumina HiSeq X Ten whole-genome sequencing of the critically endangered Sumatran rhinoceros (Dicerorhinus sumatrensis) at 96.3% Q20 bases across 1.4 trillion bases. Deep genomic coverage enables conservation genomics applications including population structure and deleterious-variant identification, though assembly completeness depends on downstream processing.

Data type / assay

WGS

Organism

Dicerorhinus sumatrensis

Instrument

HiSeq X Ten

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), submitted files

N numbers (samples, groups)

118 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1404616463260 reported

total reads 7884625461 reported

n content pct 0.006 measured

pct q20 bases 96.3 measured

pct q30 bases 90.1 measured

gc content pct 38.4 measured

mean read length 127.6 measured

mean base quality 37.6 measured

adapter content pct 0.03 measured

duplication rate pct 5.57 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.1 measured ×1 100%

duplication rate pct 5.57 measured ×0.5 100%

adapter content pct 0.03 measured ×0.4 100%

QC cost 30 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0