Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJEB35693

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

95/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina NovaSeq 6000 bulk RNA-seq dataset from Hadronyche infensa comprises 39 million reads and 11.5 billion bases with high quality (96.4% Q20, 90.8% Q30), supporting expressed-sequence-tag (EST) profiling of venom-gland transcriptome. The 40.7% GC and platform enable rapid screening of toxin variants and venom-component regulation. Researchers in toxinology and venomics can exploit this for peptide-candidate discovery and understanding venom-composition evolution.

Data type / assay
bulk-RNA-seq
Organism
Hadronyche infensa
Instrument
Illumina NovaSeq 6000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 11587720703 reported
total reads 39061314 reported
n content pct 0.006 measured
pct q20 bases 96.4 measured
pct q30 bases 90.8 measured
gc content pct 40.7 measured
mean read length 148.4 measured
mean base quality 35.4 measured
adapter content pct 0 measured
duplication rate pct 44.05 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 95/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.8 measured ×1 100%
mean base quality 35.4 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 44.05 measured ×0.4 69%
QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0