Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJEB36809

BioProject first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Metagenome amplicon sequencing via Illumina MiSeq with 5.6 million reads and 3.39 billion bases at good quality (94.4% Q20, 86.6% Q30). The 54% GC and unspecified source limit interpretability. Users should clarify the amplicon target and environmental source before assuming applicability to their study; amplicon-based profiling is inherently biased by primer design and may miss divergent taxa.

Data type / assay
amplicon
Organism
metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
91 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 3396563464 reported
total reads 5642132 reported
n content pct 0 measured
pct q20 bases 94.4 measured
pct q30 bases 86.6 measured
gc content pct 54 measured
mean read length 301 measured
mean base quality 34.8 measured
adapter content pct 0.01 measured
duplication rate pct 95.08 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 86.6 measured ×1 83%
adapter content pct 0.01 measured ×0.5 100%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0