Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJEB37442

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

69/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mouse gut metagenome amplicon sequencing via Illumina MiSeq with 8.45 million reads and 4.43 billion bases at moderate quality (90.9% Q20, 80.7% Q30). The elevated GC (57.2%) and 144 files suggest systematic sampling across multiple mice or conditions. Users should assess whether this dataset's quality and depth are suitable for detecting OTU-level differences in gut dysbiosis or intervention studies.

Data type / assay
amplicon
Organism
mouse gut metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
144 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 4437056078 reported
total reads 8455351 reported
n content pct 0 measured
pct q20 bases 90.9 measured
pct q30 bases 80.7 measured
gc content pct 57.2 measured
mean read length 299.5 measured
mean base quality 33.5 measured
adapter content pct 0 measured
duplication rate pct 92.06 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 69/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 80.7 measured ×1 54%
adapter content pct 0 measured ×0.5 100%
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0